PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02025g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 156aa    MW: 17483.3 Da    PI: 10.7701
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02025g00011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.53.7e-2834110466
                       TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............s 66 
                               kk rhski T+  +RdRR+Rls+++a+++F  qd L fdk+skt+eWLl+++k a+ e ++               s
  Niben101Scf02025g00011.1  34 KKNRHSKINTAHVPRDRRMRLSLDVARKIFNCQDLLAFDKASKTVEWLLTKSKSAVNEVVQGinkencsaatigviS 110
                               9***********************************************************99666666666555542 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-3134132IPR005333Transcription factor, TCP
PROSITE profilePS5136928.3183492IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MAANSNKDII LKKLKYKAVA RTKSDNKRVV AGYKKNRHSK INTAHVPRDR RMRLSLDVAR  60
KIFNCQDLLA FDKASKTVEW LLTKSKSAVN EVVQGINKEN CSAATIGVIS TPSTTSECEV  120
VSGIDESTTI NDIQKQPLKL RIKLTITEQM RRIANL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787900.16e-63PREDICTED: transcription factor TCP12-like
RefseqXP_016434825.16e-63PREDICTED: transcription factor TCP12-like
TrEMBLQ6Y9W12e-54Q6Y9W1_NICSY; TCP protein (Fragment)
STRINGPGSC0003DMT4000145728e-43(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.14e-24TCP domain protein 12